Cannot find molecule 0 in atomselect's molid
WebThe first step is to create aselection given the selection text, molecule id, and optional framenumber. This is done by a function called atomselect, which returns thename of the new atom selection. the second step is to use the createdselection to access the … WebOct 14, 2007 · There is no 'top' molecule in atomselect's 'molId' can't read "sellip": no such variable can't read "lseglist": no such variable -55 41 -51 34 There is no 'top' molecule in atomselect's 'molId' MOLECULE MISSING! Use resetpsf to start over. MOLECULE MISSING! Use resetpsf to start over. Info) VMD for LINUX, version 1.8.6 (April 6, 2007)
Cannot find molecule 0 in atomselect's molid
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WebUsing the atomselect command Atom selection is the primary method to access information about the atoms in a molecule. It works in two steps. The first step is to create a selection given the selection text, molecule id, and optional frame number. WebFeb 21, 2007 · There is no 'top' molecule in atomselect's 'molId' can't read "all": no such variable segid WT1 to WT99 and same residue as abs (z) <10 There is no 'top' molecule in atomselect's 'molId' can't read "sel": no such variable There is no 'top' molecule in atomselect's 'molId' can't read "badwater": no such variable
WebTo enter query mode, type “0” (that’s a zero) in the display window, or select “Mouse...Query” from the main VMD menu. If you click on an atom, and it appears nothing happens, don’t worry. The information shows up in the terminal window that VMD … Web# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # --- DISCLAIMER (by Clement Arnarez, [email protected]): # # # # This script is ...
WebFeb 21, 2007 · There is no 'top' molecule in atomselect's 'molId' can't read "all": no such variable segid WT1 to WT99 and same residue as abs(z) <10 There is no 'top' molecule in atomselect's 'molId' can't read "sel": no such variable There is no 'top' molecule in … Webset sel1 [atomselect 0 "name Fe"] set sel2 [atomselect 1 "resid 2814"] setbonds 0 1 The effect was : Cannot find molecule 1 in atomselect's 'molId Thank you very much. Yves Frapart Next message: Justin Gullingsrud: "Re: Drawing atom - atom bonds" Previous …
WebAtom selection is the primary method to access information about It works in two steps. selection given the selection text, molecule id, and optional frame number. This is done by a function called atomselect, which returns the name of the new atom selection. the second step is to use the created
WebThe codes (molIDs) are not reused after a molecule is deleted, so if you, for example, have three molecules loaded (numbered 0, 1, 2), delete molecule with molID equal to 0, and then load another molecule, the new molecule will have molID 3. Thus, the list of available … grants for israel programsWebDec 17, 2012 · > There is no 'top' molecule in atomselect's 'molId' > can't read "sellip": no such variable > can't read "lseglist": no such variable > -55 > 41 > -51 > 34 > There is no 'top' molecule in atomselect's 'molId' > MOLECULE MISSING! Use resetpsf to start … grants for irish students studying in the ukWebJun 4, 2003 · there's a much faster way to do it: the "label graph" command. Here's a script that returns the values for all timesteps: proc all_dihed_angle { a1 a2 a3 a4 } { # Delete all existing Dihdral labels so that the one we add has index 0. label delete Dihedrals # Use the top molecule set molid [molinfo top] # Add the dihedral monitor grants for ipads for nonprofitsWeb// here I have 'molid', so get the given molecule Molecule *mol = mlist-> mol_from_id (molid); if (!mol) { Tcl_AppendResult (interp, "Cannot find molecule ", text, NULL); } return mol; } ///// tcl interface to the AtomSel object // forward definitions static int … grants for irrigationWebTable of Contents 1 Volume of a solvent exposed cavity, testing the Nrays parameter 2 2 Parameter considerations for fixed-boundary implementation 3 3 Trajectory analysis with fuzzy-boundary detection 4 4 Volume of the HIV-1 capsid 5 5 Comparison of volume … grants for ipads in the classroomWebMay 20, 2009 · > a new molecules and thus the selections referring > to molecule 0 will only refer to the .pdb file which > has only one frame, whereas the referring to the top > molecule will give you the number of frames of the > dcd file. grants for irish students studying abroadgrants for ipads for special needs students